You probably could file them with no ill affect.
One question I had for my dealer last week was regarding the ROPS with my nifty roof panel. (You gotta get one of those! Keeps you out of the sun and mostly out of the rain.) With nearly 200 hours on the machine, the ROPS hinge is fairly loose and when you hit a good bump. the ROPS jiggles as the roof bounces forward and back. Kind of annoying.
The tech showed me there are threaded sockets in the joint where you could screw short bolts into the inside of the joint and tighten up the ROPS. Unless you have a roof, you probably will never notice.
As for the "Lawyer switches" under your seat, I used to kill my engine every time I leaned over to check clearance on the wheel. The simple solution was to bend the bracket the switch is on so the switch arm made better contact. Now, I can wiggle around and not kill the motor. Try this simple fix if you want to keep her running.