yep look for pry and beating marks
clean the old stuff off with a rotary wire brush in a drill.
some techs like to use tools that are considerably more "brash" and that's all I'm saying. They can damage the housing(s).
Does either part have a groove? If so, the groove needs to be completely cleaned out. I usually use a pick to get most of it and wire brush the remainder. It acts as an expansion groove, when silly-cone dries it it expands into the groove and seals it a little better
Next. Bolt holes. And I have actually DONE this. Some of the bolt holes are blind meaning they do not go all the way through. Now, when the housing is taken off, often there is some junk in the back of the bolt holes. "Junk" meaning it can be water, oil, or silicone. CLEAN IT ALL OUT. If for some reason there is any left behind, that stuff acts like a hydrualic ram. When you torque the bolt back in, there is sufficient force to break or crack the back of the housing and then you end up with a mystery leak. I learned this the hard way (cost me a case). One of the little details that I will never in my life forget, is to clean out the blind holes in whatever I'm bolting. Dad did it on an original Boss 302 block, water pump hole. Full of silicone, he runs the bolt in, it gets tight prematurely--he grabs a wrench and starts cranking on it. Pop. Back of the hole broke out. I won't repeat what his words were but you can use your imagination. It wasn't nice.
Ultra series silicone, you apply it to dry and CLEAN (and flat) surfaces, then assemble the parts hand tight only. Meaning, put the housing on, then just start the bolts. Soon as you see the stuff start to ooze out, stop. Let it sit one hour. Then tighten it all up and let it cure 24 hours. As long as the surfaces are prepped correctly it will not leak. Kubota uses Threebond 1206 I believe. Permatex ultra is just as good. In my case, I like to paint the cured liquid gasket that oozes out, makes for a more professional repair. Can't tell you how many customers have complimented on this, it only takes a minute and a few oz of gray paint to do, but just looks better. Then later on if you decide to sell it, only YOU will know. Some buyers are sensitive to silicone hanging out. Painted over, they don't see it as easily. Looks factory.