I'm not intimate with your machine model so please pardon if I've missed something.
But...
This sounds like something similar that we accomplished on a Kubota.
You don't mention if the oil seal is internal or if you're talking about the gasket between the cover and the transmission housing.
Consider that in either case you should have a replacement gasket on hand. I think you'll need it.
If you install a new pre-cut gasket between the cover and the housing (this in addition to an internal oil seal) my suggestion is to go back with a good soft-set gasket sealer completely coating both sides of the gasket. I use 'Form-A-Gasket' #2 Aviation type on almost everything.
However, if you find---as we did---that there is no gasket between the cover and housing (again, in addition to the internal oil seal you mention), my suggestion is to use a quality RTV silicone sealant. We typically use 'grey' colored because it matches our Kubota better than black, red, blue.
If you find the factory also used RTV you'll have to pry it apart without scarring the mating surface(s). Ensure cleanliness before reassembly. You can find an aerosol at most parts houses that will remove old RTV gasket material. Be cautious about dropping old gasketing, RTV, and aerosols into the inner workings.
Please post back your experiences so we may all learn.