You're reviving a thread from 15 years ago, and Michael hasn't been here in 12 years.
I'd defer to your Operator's Manual. If you don't have one, try here
www.kubotabooks.com. Get a Workshop Manual (WSM) while there too.
I don't have a BX TLB (tractor/loader/backhoe). I'm thinking when Michael referenced "everything on the ground," he meant a front end loader (FEL), as that retracts the hydraulic cylinders for the FEL.
With a backhoe (BH), to put it on the ground actually extends the cylinders on the BH and the stabilizers. I'm thinking you'd want to leave in travel position, as some are retracted for the most part.
Again, check the manual. Probably best to be consistent - do it same way each time.